This is a list of example workflows exemplifying the use of Cuneiform for different use cases. All workflows come in the form of a Chef cookbook, which automatically sets up the workflow, fetches all input data, and sets up all necessary tools.

Machine Learning and Information Retrieval

Bioinformatics and Next-Generation Sequencing

  • Phylogeny
  • GC Count
  • ChIP-Seq
  • Variant Calling (GATK)
  • RNA-Seq
  • Variant Calling (VarScan)
  • Methylation Analysis